完成世界书、骰子、apiconfig页面处理

frontend/node_modules/layout-base/README.md

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+layout-base
+================================================================================
+
+## Description
+
+This repository implements a basic layout model and some utilities for Cytoscape.js layout extensions. 
+
+## Usage instructions
+
+Add `layout-base` as a dependecy to your layout extension.
+
+`require()` in the extension to reach functionality:
+
+ * `var Integer = require(layout-base).Integer`,
+ * `var Layout = require(layout-base).Layout`,
+ * `...`
+ 
+ For a usage example, see [cose-base](https://github.com/iVis-at-Bilkent/cose-base) or [avsdf-base](https://github.com/iVis-at-Bilkent/avsdf-base).
+ 
+ ![](https://github.com/iVis-at-Bilkent/layout-base/blob/master/layout-schema.png)

frontend/node_modules/layout-base/index.js

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+'use strict';
+
+let layoutBase = function(){
+  return;
+};
+
+layoutBase.FDLayout = require('./src/fd/FDLayout');
+layoutBase.FDLayoutConstants = require('./src/fd/FDLayoutConstants');
+layoutBase.FDLayoutEdge = require('./src/fd/FDLayoutEdge');
+layoutBase.FDLayoutNode = require('./src/fd/FDLayoutNode');
+layoutBase.DimensionD = require('./src/util/DimensionD');
+layoutBase.HashMap = require('./src/util/HashMap');
+layoutBase.HashSet = require('./src/util/HashSet');
+layoutBase.IGeometry = require('./src/util/IGeometry');
+layoutBase.IMath = require('./src/util/IMath');
+layoutBase.Integer = require('./src/util/Integer');
+layoutBase.Point = require('./src/util/Point');
+layoutBase.PointD = require('./src/util/PointD');
+layoutBase.RandomSeed = require('./src/util/RandomSeed');
+layoutBase.RectangleD = require('./src/util/RectangleD');
+layoutBase.Transform = require('./src/util/Transform');
+layoutBase.UniqueIDGeneretor = require('./src/util/UniqueIDGeneretor');
+layoutBase.Quicksort = require('./src/util/Quicksort');
+layoutBase.LinkedList = require('./src/util/LinkedList');
+layoutBase.LGraphObject = require('./src/LGraphObject');
+layoutBase.LGraph = require('./src/LGraph');
+layoutBase.LEdge = require('./src/LEdge');
+layoutBase.LGraphManager = require('./src/LGraphManager');
+layoutBase.LNode = require('./src/LNode');
+layoutBase.Layout = require('./src/Layout');
+layoutBase.LayoutConstants = require('./src/LayoutConstants');
+layoutBase.NeedlemanWunsch = require('./src/util/alignment/NeedlemanWunsch');
+
+module.exports = layoutBase;
+
+

frontend/node_modules/layout-base/package.json

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+{
+  "name": "layout-base",
+  "version": "1.0.2",
+  "description": "Basic layout model and some utilities for Cytoscape.js layout extensions",
+  "main": "layout-base.js",
+  "scripts": {
+    "test": "echo \"Error: no test specified\" && exit 1",
+    "build": "cross-env NODE_ENV=production webpack"
+  },
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/iVis-at-Bilkent/layout-base.git"
+  },
+  "author": "",
+  "license": "MIT",
+  "bugs": {
+    "url": "https://github.com/iVis-at-Bilkent/layout-base/issues"
+  },
+  "homepage": "https://github.com/iVis-at-Bilkent/layout-base#readme",
+  "devDependencies": {
+    "babel-core": "^6.24.1",
+    "babel-loader": "^7.0.0",
+    "babel-preset-env": "^1.5.1",
+    "camelcase": "^4.1.0",
+    "cpy-cli": "^1.0.1",
+    "cross-env": "^5.1.6",
+    "eslint": "^3.19.0",
+    "gh-pages": "^1.1.0",
+    "npm-run-all": "^4.1.2",
+    "rimraf": "^2.6.2",
+    "update": "^0.7.4",
+    "updater-license": "^1.0.0",
+    "forever": "^0.15.3",
+    "webpack": "^2.6.1",
+    "webpack-dev-server": "^2.4.5"
+  }
+}

frontend/node_modules/layout-base/src/LNode.js

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+var LGraphObject = require('./LGraphObject');
+var Integer = require('./util/Integer');
+var RectangleD = require('./util/RectangleD');
+var LayoutConstants = require('./LayoutConstants');
+var RandomSeed = require('./util/RandomSeed');
+var PointD = require('./util/PointD');
+
+function LNode(gm, loc, size, vNode) {
+  //Alternative constructor 1 : LNode(LGraphManager gm, Point loc, Dimension size, Object vNode)
+  if (size == null && vNode == null) {
+    vNode = loc;
+  }
+
+  LGraphObject.call(this, vNode);
+
+  //Alternative constructor 2 : LNode(Layout layout, Object vNode)
+  if (gm.graphManager != null)
+    gm = gm.graphManager;
+
+  this.estimatedSize = Integer.MIN_VALUE;
+  this.inclusionTreeDepth = Integer.MAX_VALUE;
+  this.vGraphObject = vNode;
+  this.edges = [];
+  this.graphManager = gm;
+
+  if (size != null && loc != null)
+    this.rect = new RectangleD(loc.x, loc.y, size.width, size.height);
+  else
+    this.rect = new RectangleD();
+}
+
+LNode.prototype = Object.create(LGraphObject.prototype);
+for (var prop in LGraphObject) {
+  LNode[prop] = LGraphObject[prop];
+}
+
+LNode.prototype.getEdges = function ()
+{
+  return this.edges;
+};
+
+LNode.prototype.getChild = function ()
+{
+  return this.child;
+};
+
+LNode.prototype.getOwner = function ()
+{
+//  if (this.owner != null) {
+//    if (!(this.owner == null || this.owner.getNodes().indexOf(this) > -1)) {
+//      throw "assert failed";
+//    }
+//  }
+
+  return this.owner;
+};
+
+LNode.prototype.getWidth = function ()
+{
+  return this.rect.width;
+};
+
+LNode.prototype.setWidth = function (width)
+{
+  this.rect.width = width;
+};
+
+LNode.prototype.getHeight = function ()
+{
+  return this.rect.height;
+};
+
+LNode.prototype.setHeight = function (height)
+{
+  this.rect.height = height;
+};
+
+LNode.prototype.getCenterX = function ()
+{
+  return this.rect.x + this.rect.width / 2;
+};
+
+LNode.prototype.getCenterY = function ()
+{
+  return this.rect.y + this.rect.height / 2;
+};
+
+LNode.prototype.getCenter = function ()
+{
+  return new PointD(this.rect.x + this.rect.width / 2,
+          this.rect.y + this.rect.height / 2);
+};
+
+LNode.prototype.getLocation = function ()
+{
+  return new PointD(this.rect.x, this.rect.y);
+};
+
+LNode.prototype.getRect = function ()
+{
+  return this.rect;
+};
+
+LNode.prototype.getDiagonal = function ()
+{
+  return Math.sqrt(this.rect.width * this.rect.width +
+          this.rect.height * this.rect.height);
+};
+
+/**
+ * This method returns half the diagonal length of this node.
+ */
+LNode.prototype.getHalfTheDiagonal = function () {
+  return Math.sqrt(this.rect.height * this.rect.height +
+      this.rect.width * this.rect.width) / 2;
+};
+
+LNode.prototype.setRect = function (upperLeft, dimension)
+{
+  this.rect.x = upperLeft.x;
+  this.rect.y = upperLeft.y;
+  this.rect.width = dimension.width;
+  this.rect.height = dimension.height;
+};
+
+LNode.prototype.setCenter = function (cx, cy)
+{
+  this.rect.x = cx - this.rect.width / 2;
+  this.rect.y = cy - this.rect.height / 2;
+};
+
+LNode.prototype.setLocation = function (x, y)
+{
+  this.rect.x = x;
+  this.rect.y = y;
+};
+
+LNode.prototype.moveBy = function (dx, dy)
+{
+  this.rect.x += dx;
+  this.rect.y += dy;
+};
+
+LNode.prototype.getEdgeListToNode = function (to)
+{
+  var edgeList = [];
+  var edge;
+  var self = this;
+
+  self.edges.forEach(function(edge) {
+    
+    if (edge.target == to)
+    {
+      if (edge.source != self)
+        throw "Incorrect edge source!";
+
+      edgeList.push(edge);
+    }
+  });
+
+  return edgeList;
+};
+
+LNode.prototype.getEdgesBetween = function (other)
+{
+  var edgeList = [];
+  var edge;
+  
+  var self = this;
+  self.edges.forEach(function(edge) {
+
+    if (!(edge.source == self || edge.target == self))
+      throw "Incorrect edge source and/or target";
+
+    if ((edge.target == other) || (edge.source == other))
+    {
+      edgeList.push(edge);
+    }
+  });
+
+  return edgeList;
+};
+
+LNode.prototype.getNeighborsList = function ()
+{
+  var neighbors = new Set();
+  
+  var self = this;
+  self.edges.forEach(function(edge) {
+
+    if (edge.source == self)
+    {
+      neighbors.add(edge.target);
+    }
+    else
+    {
+      if (edge.target != self) {
+        throw "Incorrect incidency!";
+      }
+    
+      neighbors.add(edge.source);
+    }
+  });
+
+  return neighbors;
+};
+
+LNode.prototype.withChildren = function ()
+{
+  var withNeighborsList = new Set();
+  var childNode;
+  var children;
+
+  withNeighborsList.add(this);
+
+  if (this.child != null)
+  {
+    var nodes = this.child.getNodes();
+    for (var i = 0; i < nodes.length; i++)
+    {
+      childNode = nodes[i];
+      children = childNode.withChildren();
+      children.forEach(function(node) {
+        withNeighborsList.add(node);
+      });
+    }
+  }
+
+  return withNeighborsList;
+};
+
+LNode.prototype.getNoOfChildren = function ()
+{
+  var noOfChildren = 0;
+  var childNode;
+
+  if(this.child == null){
+    noOfChildren = 1;
+  }
+  else
+  {
+    var nodes = this.child.getNodes();
+    for (var i = 0; i < nodes.length; i++)
+    {
+      childNode = nodes[i];
+
+      noOfChildren += childNode.getNoOfChildren();
+    }
+  }
+  
+  if(noOfChildren == 0){
+    noOfChildren = 1;
+  }
+  return noOfChildren;
+};
+
+LNode.prototype.getEstimatedSize = function () {
+  if (this.estimatedSize == Integer.MIN_VALUE) {
+    throw "assert failed";
+  }
+  return this.estimatedSize;
+};
+
+LNode.prototype.calcEstimatedSize = function () {
+  if (this.child == null)
+  {
+    return this.estimatedSize = (this.rect.width + this.rect.height) / 2;
+  }
+  else
+  {
+    this.estimatedSize = this.child.calcEstimatedSize();
+    this.rect.width = this.estimatedSize;
+    this.rect.height = this.estimatedSize;
+
+    return this.estimatedSize;
+  }
+};
+
+LNode.prototype.scatter = function () {
+  var randomCenterX;
+  var randomCenterY;
+
+  var minX = -LayoutConstants.INITIAL_WORLD_BOUNDARY;
+  var maxX = LayoutConstants.INITIAL_WORLD_BOUNDARY;
+  randomCenterX = LayoutConstants.WORLD_CENTER_X +
+          (RandomSeed.nextDouble() * (maxX - minX)) + minX;
+
+  var minY = -LayoutConstants.INITIAL_WORLD_BOUNDARY;
+  var maxY = LayoutConstants.INITIAL_WORLD_BOUNDARY;
+  randomCenterY = LayoutConstants.WORLD_CENTER_Y +
+          (RandomSeed.nextDouble() * (maxY - minY)) + minY;
+
+  this.rect.x = randomCenterX;
+  this.rect.y = randomCenterY
+};
+
+LNode.prototype.updateBounds = function () {
+  if (this.getChild() == null) {
+    throw "assert failed";
+  }
+  if (this.getChild().getNodes().length != 0)
+  {
+    // wrap the children nodes by re-arranging the boundaries
+    var childGraph = this.getChild();
+    childGraph.updateBounds(true);
+
+    this.rect.x = childGraph.getLeft();
+    this.rect.y = childGraph.getTop();
+
+    this.setWidth(childGraph.getRight() - childGraph.getLeft());
+    this.setHeight(childGraph.getBottom() - childGraph.getTop());
+    
+    // Update compound bounds considering its label properties    
+    if(LayoutConstants.NODE_DIMENSIONS_INCLUDE_LABELS){
+        
+      var width = childGraph.getRight() - childGraph.getLeft();
+      var height = childGraph.getBottom() - childGraph.getTop();
+
+      if(this.labelWidth > width){
+        this.rect.x -= (this.labelWidth - width) / 2;
+        this.setWidth(this.labelWidth);
+      }
+
+      if(this.labelHeight > height){
+        if(this.labelPos == "center"){
+          this.rect.y -= (this.labelHeight - height) / 2;
+        }
+        else if(this.labelPos == "top"){
+          this.rect.y -= (this.labelHeight - height); 
+        }
+        this.setHeight(this.labelHeight);
+      }
+    }
+  }
+};
+
+LNode.prototype.getInclusionTreeDepth = function ()
+{
+  if (this.inclusionTreeDepth == Integer.MAX_VALUE) {
+    throw "assert failed";
+  }
+  return this.inclusionTreeDepth;
+};
+
+LNode.prototype.transform = function (trans)
+{
+  var left = this.rect.x;
+
+  if (left > LayoutConstants.WORLD_BOUNDARY)
+  {
+    left = LayoutConstants.WORLD_BOUNDARY;
+  }
+  else if (left < -LayoutConstants.WORLD_BOUNDARY)
+  {
+    left = -LayoutConstants.WORLD_BOUNDARY;
+  }
+
+  var top = this.rect.y;
+
+  if (top > LayoutConstants.WORLD_BOUNDARY)
+  {
+    top = LayoutConstants.WORLD_BOUNDARY;
+  }
+  else if (top < -LayoutConstants.WORLD_BOUNDARY)
+  {
+    top = -LayoutConstants.WORLD_BOUNDARY;
+  }
+
+  var leftTop = new PointD(left, top);
+  var vLeftTop = trans.inverseTransformPoint(leftTop);
+
+  this.setLocation(vLeftTop.x, vLeftTop.y);
+};
+
+LNode.prototype.getLeft = function ()
+{
+  return this.rect.x;
+};
+
+LNode.prototype.getRight = function ()
+{
+  return this.rect.x + this.rect.width;
+};
+
+LNode.prototype.getTop = function ()
+{
+  return this.rect.y;
+};
+
+LNode.prototype.getBottom = function ()
+{
+  return this.rect.y + this.rect.height;
+};
+
+LNode.prototype.getParent = function ()
+{
+  if (this.owner == null)
+  {
+    return null;
+  }
+
+  return this.owner.getParent();
+};
+
+module.exports = LNode;

frontend/node_modules/layout-base/src/Layout.js

@@ -0,0 +1,672 @@
+var LayoutConstants = require('./LayoutConstants');
+var LGraphManager = require('./LGraphManager');
+var LNode = require('./LNode');
+var LEdge = require('./LEdge');
+var LGraph = require('./LGraph');
+var PointD = require('./util/PointD');
+var Transform = require('./util/Transform');
+var Emitter = require('./util/Emitter');
+
+function Layout(isRemoteUse) {
+  Emitter.call( this );
+
+  //Layout Quality: 0:draft, 1:default, 2:proof
+  this.layoutQuality = LayoutConstants.QUALITY;
+  //Whether layout should create bendpoints as needed or not
+  this.createBendsAsNeeded =
+          LayoutConstants.DEFAULT_CREATE_BENDS_AS_NEEDED;
+  //Whether layout should be incremental or not
+  this.incremental = LayoutConstants.DEFAULT_INCREMENTAL;
+  //Whether we animate from before to after layout node positions
+  this.animationOnLayout =
+          LayoutConstants.DEFAULT_ANIMATION_ON_LAYOUT;
+  //Whether we animate the layout process or not
+  this.animationDuringLayout = LayoutConstants.DEFAULT_ANIMATION_DURING_LAYOUT;
+  //Number iterations that should be done between two successive animations
+  this.animationPeriod = LayoutConstants.DEFAULT_ANIMATION_PERIOD;
+  /**
+   * Whether or not leaf nodes (non-compound nodes) are of uniform sizes. When
+   * they are, both spring and repulsion forces between two leaf nodes can be
+   * calculated without the expensive clipping point calculations, resulting
+   * in major speed-up.
+   */
+  this.uniformLeafNodeSizes =
+          LayoutConstants.DEFAULT_UNIFORM_LEAF_NODE_SIZES;
+  /**
+   * This is used for creation of bendpoints by using dummy nodes and edges.
+   * Maps an LEdge to its dummy bendpoint path.
+   */
+  this.edgeToDummyNodes = new Map();
+  this.graphManager = new LGraphManager(this);
+  this.isLayoutFinished = false;
+  this.isSubLayout = false;
+  this.isRemoteUse = false;
+
+  if (isRemoteUse != null) {
+    this.isRemoteUse = isRemoteUse;
+  }
+}
+
+Layout.RANDOM_SEED = 1;
+
+Layout.prototype = Object.create( Emitter.prototype );
+
+Layout.prototype.getGraphManager = function () {
+  return this.graphManager;
+};
+
+Layout.prototype.getAllNodes = function () {
+  return this.graphManager.getAllNodes();
+};
+
+Layout.prototype.getAllEdges = function () {
+  return this.graphManager.getAllEdges();
+};
+
+Layout.prototype.getAllNodesToApplyGravitation = function () {
+  return this.graphManager.getAllNodesToApplyGravitation();
+};
+
+Layout.prototype.newGraphManager = function () {
+  var gm = new LGraphManager(this);
+  this.graphManager = gm;
+  return gm;
+};
+
+Layout.prototype.newGraph = function (vGraph)
+{
+  return new LGraph(null, this.graphManager, vGraph);
+};
+
+Layout.prototype.newNode = function (vNode)
+{
+  return new LNode(this.graphManager, vNode);
+};
+
+Layout.prototype.newEdge = function (vEdge)
+{
+  return new LEdge(null, null, vEdge);
+};
+
+Layout.prototype.checkLayoutSuccess = function() {
+  return (this.graphManager.getRoot() == null)
+          || this.graphManager.getRoot().getNodes().length == 0
+          || this.graphManager.includesInvalidEdge();
+};
+
+Layout.prototype.runLayout = function ()
+{
+  this.isLayoutFinished = false;
+  
+  if (this.tilingPreLayout) {
+    this.tilingPreLayout();
+  }
+
+  this.initParameters();
+  var isLayoutSuccessfull;
+
+  if (this.checkLayoutSuccess())
+  {
+    isLayoutSuccessfull = false;
+  }
+  else
+  {
+    isLayoutSuccessfull = this.layout();
+  }
+  
+  if (LayoutConstants.ANIMATE === 'during') {
+    // If this is a 'during' layout animation. Layout is not finished yet. 
+    // We need to perform these in index.js when layout is really finished.
+    return false;
+  }
+  
+  if (isLayoutSuccessfull)
+  {
+    if (!this.isSubLayout)
+    {
+      this.doPostLayout();
+    }
+  }
+
+  if (this.tilingPostLayout) {
+    this.tilingPostLayout();
+  }
+
+  this.isLayoutFinished = true;
+
+  return isLayoutSuccessfull;
+};
+
+/**
+ * This method performs the operations required after layout.
+ */
+Layout.prototype.doPostLayout = function ()
+{
+  //assert !isSubLayout : "Should not be called on sub-layout!";
+  // Propagate geometric changes to v-level objects
+  if(!this.incremental){
+    this.transform();
+  }
+  this.update();
+};
+
+/**
+ * This method updates the geometry of the target graph according to
+ * calculated layout.
+ */
+Layout.prototype.update2 = function () {
+  // update bend points
+  if (this.createBendsAsNeeded)
+  {
+    this.createBendpointsFromDummyNodes();
+
+    // reset all edges, since the topology has changed
+    this.graphManager.resetAllEdges();
+  }
+
+  // perform edge, node and root updates if layout is not called
+  // remotely
+  if (!this.isRemoteUse)
+  {
+    // update all edges
+    var edge;
+    var allEdges = this.graphManager.getAllEdges();
+    for (var i = 0; i < allEdges.length; i++)
+    {
+      edge = allEdges[i];
+//      this.update(edge);
+    }
+
+    // recursively update nodes
+    var node;
+    var nodes = this.graphManager.getRoot().getNodes();
+    for (var i = 0; i < nodes.length; i++)
+    {
+      node = nodes[i];
+//      this.update(node);
+    }
+
+    // update root graph
+    this.update(this.graphManager.getRoot());
+  }
+};
+
+Layout.prototype.update = function (obj) {
+  if (obj == null) {
+    this.update2();
+  }
+  else if (obj instanceof LNode) {
+    var node = obj;
+    if (node.getChild() != null)
+    {
+      // since node is compound, recursively update child nodes
+      var nodes = node.getChild().getNodes();
+      for (var i = 0; i < nodes.length; i++)
+      {
+        update(nodes[i]);
+      }
+    }
+
+    // if the l-level node is associated with a v-level graph object,
+    // then it is assumed that the v-level node implements the
+    // interface Updatable.
+    if (node.vGraphObject != null)
+    {
+      // cast to Updatable without any type check
+      var vNode = node.vGraphObject;
+
+      // call the update method of the interface
+      vNode.update(node);
+    }
+  }
+  else if (obj instanceof LEdge) {
+    var edge = obj;
+    // if the l-level edge is associated with a v-level graph object,
+    // then it is assumed that the v-level edge implements the
+    // interface Updatable.
+
+    if (edge.vGraphObject != null)
+    {
+      // cast to Updatable without any type check
+      var vEdge = edge.vGraphObject;
+
+      // call the update method of the interface
+      vEdge.update(edge);
+    }
+  }
+  else if (obj instanceof LGraph) {
+    var graph = obj;
+    // if the l-level graph is associated with a v-level graph object,
+    // then it is assumed that the v-level object implements the
+    // interface Updatable.
+
+    if (graph.vGraphObject != null)
+    {
+      // cast to Updatable without any type check
+      var vGraph = graph.vGraphObject;
+
+      // call the update method of the interface
+      vGraph.update(graph);
+    }
+  }
+};
+
+/**
+ * This method is used to set all layout parameters to default values
+ * determined at compile time.
+ */
+Layout.prototype.initParameters = function () {
+  if (!this.isSubLayout)
+  {
+    this.layoutQuality = LayoutConstants.QUALITY;
+    this.animationDuringLayout = LayoutConstants.DEFAULT_ANIMATION_DURING_LAYOUT;
+    this.animationPeriod = LayoutConstants.DEFAULT_ANIMATION_PERIOD;
+    this.animationOnLayout = LayoutConstants.DEFAULT_ANIMATION_ON_LAYOUT;
+    this.incremental = LayoutConstants.DEFAULT_INCREMENTAL;
+    this.createBendsAsNeeded = LayoutConstants.DEFAULT_CREATE_BENDS_AS_NEEDED;
+    this.uniformLeafNodeSizes = LayoutConstants.DEFAULT_UNIFORM_LEAF_NODE_SIZES;
+  }
+
+  if (this.animationDuringLayout)
+  {
+    this.animationOnLayout = false;
+  }
+};
+
+Layout.prototype.transform = function (newLeftTop) {
+  if (newLeftTop == undefined) {
+    this.transform(new PointD(0, 0));
+  }
+  else {
+    // create a transformation object (from Eclipse to layout). When an
+    // inverse transform is applied, we get upper-left coordinate of the
+    // drawing or the root graph at given input coordinate (some margins
+    // already included in calculation of left-top).
+
+    var trans = new Transform();
+    var leftTop = this.graphManager.getRoot().updateLeftTop();
+
+    if (leftTop != null)
+    {
+      trans.setWorldOrgX(newLeftTop.x);
+      trans.setWorldOrgY(newLeftTop.y);
+
+      trans.setDeviceOrgX(leftTop.x);
+      trans.setDeviceOrgY(leftTop.y);
+
+      var nodes = this.getAllNodes();
+      var node;
+
+      for (var i = 0; i < nodes.length; i++)
+      {
+        node = nodes[i];
+        node.transform(trans);
+      }
+    }
+  }
+};
+
+Layout.prototype.positionNodesRandomly = function (graph) {
+
+  if (graph == undefined) {
+    //assert !this.incremental;
+    this.positionNodesRandomly(this.getGraphManager().getRoot());
+    this.getGraphManager().getRoot().updateBounds(true);
+  }
+  else {
+    var lNode;
+    var childGraph;
+
+    var nodes = graph.getNodes();
+    for (var i = 0; i < nodes.length; i++)
+    {
+      lNode = nodes[i];
+      childGraph = lNode.getChild();
+
+      if (childGraph == null)
+      {
+        lNode.scatter();
+      }
+      else if (childGraph.getNodes().length == 0)
+      {
+        lNode.scatter();
+      }
+      else
+      {
+        this.positionNodesRandomly(childGraph);
+        lNode.updateBounds();
+      }
+    }
+  }
+};
+
+/**
+ * This method returns a list of trees where each tree is represented as a
+ * list of l-nodes. The method returns a list of size 0 when:
+ * - The graph is not flat or
+ * - One of the component(s) of the graph is not a tree.
+ */
+Layout.prototype.getFlatForest = function ()
+{
+  var flatForest = [];
+  var isForest = true;
+
+  // Quick reference for all nodes in the graph manager associated with
+  // this layout. The list should not be changed.
+  var allNodes = this.graphManager.getRoot().getNodes();
+
+  // First be sure that the graph is flat
+  var isFlat = true;
+
+  for (var i = 0; i < allNodes.length; i++)
+  {
+    if (allNodes[i].getChild() != null)
+    {
+      isFlat = false;
+    }
+  }
+
+  // Return empty forest if the graph is not flat.
+  if (!isFlat)
+  {
+    return flatForest;
+  }
+
+  // Run BFS for each component of the graph.
+
+  var visited = new Set();
+  var toBeVisited = [];
+  var parents = new Map();
+  var unProcessedNodes = [];
+
+  unProcessedNodes = unProcessedNodes.concat(allNodes);
+
+  // Each iteration of this loop finds a component of the graph and
+  // decides whether it is a tree or not. If it is a tree, adds it to the
+  // forest and continued with the next component.
+
+  while (unProcessedNodes.length > 0 && isForest)
+  {
+    toBeVisited.push(unProcessedNodes[0]);
+
+    // Start the BFS. Each iteration of this loop visits a node in a
+    // BFS manner.
+    while (toBeVisited.length > 0 && isForest)
+    {
+      //pool operation
+      var currentNode = toBeVisited[0];
+      toBeVisited.splice(0, 1);
+      visited.add(currentNode);
+
+      // Traverse all neighbors of this node
+      var neighborEdges = currentNode.getEdges();
+
+      for (var i = 0; i < neighborEdges.length; i++)
+      {
+        var currentNeighbor =
+                neighborEdges[i].getOtherEnd(currentNode);
+
+        // If BFS is not growing from this neighbor.
+        if (parents.get(currentNode) != currentNeighbor)
+        {
+          // We haven't previously visited this neighbor.
+          if (!visited.has(currentNeighbor))
+          {
+            toBeVisited.push(currentNeighbor);
+            parents.set(currentNeighbor, currentNode);
+          }
+          // Since we have previously visited this neighbor and
+          // this neighbor is not parent of currentNode, given
+          // graph contains a component that is not tree, hence
+          // it is not a forest.
+          else
+          {
+            isForest = false;
+            break;
+          }
+        }
+      }
+    }
+
+    // The graph contains a component that is not a tree. Empty
+    // previously found trees. The method will end.
+    if (!isForest)
+    {
+      flatForest = [];
+    }
+    // Save currently visited nodes as a tree in our forest. Reset
+    // visited and parents lists. Continue with the next component of
+    // the graph, if any.
+    else
+    {
+      var temp = [...visited];
+      flatForest.push(temp);
+      //flatForest = flatForest.concat(temp);
+      //unProcessedNodes.removeAll(visited);
+      for (var i = 0; i < temp.length; i++) {
+        var value = temp[i];
+        var index = unProcessedNodes.indexOf(value);
+        if (index > -1) {
+          unProcessedNodes.splice(index, 1);
+        }
+      }
+      visited = new Set();
+      parents = new Map();
+    }
+  }
+
+  return flatForest;
+};
+
+/**
+ * This method creates dummy nodes (an l-level node with minimal dimensions)
+ * for the given edge (one per bendpoint). The existing l-level structure
+ * is updated accordingly.
+ */
+Layout.prototype.createDummyNodesForBendpoints = function (edge)
+{
+  var dummyNodes = [];
+  var prev = edge.source;
+
+  var graph = this.graphManager.calcLowestCommonAncestor(edge.source, edge.target);
+
+  for (var i = 0; i < edge.bendpoints.length; i++)
+  {
+    // create new dummy node
+    var dummyNode = this.newNode(null);
+    dummyNode.setRect(new Point(0, 0), new Dimension(1, 1));
+
+    graph.add(dummyNode);
+
+    // create new dummy edge between prev and dummy node
+    var dummyEdge = this.newEdge(null);
+    this.graphManager.add(dummyEdge, prev, dummyNode);
+
+    dummyNodes.add(dummyNode);
+    prev = dummyNode;
+  }
+
+  var dummyEdge = this.newEdge(null);
+  this.graphManager.add(dummyEdge, prev, edge.target);
+
+  this.edgeToDummyNodes.set(edge, dummyNodes);
+
+  // remove real edge from graph manager if it is inter-graph
+  if (edge.isInterGraph())
+  {
+    this.graphManager.remove(edge);
+  }
+  // else, remove the edge from the current graph
+  else
+  {
+    graph.remove(edge);
+  }
+
+  return dummyNodes;
+};
+
+/**
+ * This method creates bendpoints for edges from the dummy nodes
+ * at l-level.
+ */
+Layout.prototype.createBendpointsFromDummyNodes = function ()
+{
+  var edges = [];
+  edges = edges.concat(this.graphManager.getAllEdges());
+  edges = [...this.edgeToDummyNodes.keys()].concat(edges);
+
+  for (var k = 0; k < edges.length; k++)
+  {
+    var lEdge = edges[k];
+
+    if (lEdge.bendpoints.length > 0)
+    {
+      var path = this.edgeToDummyNodes.get(lEdge);
+
+      for (var i = 0; i < path.length; i++)
+      {
+        var dummyNode = path[i];
+        var p = new PointD(dummyNode.getCenterX(),
+                dummyNode.getCenterY());
+
+        // update bendpoint's location according to dummy node
+        var ebp = lEdge.bendpoints.get(i);
+        ebp.x = p.x;
+        ebp.y = p.y;
+
+        // remove the dummy node, dummy edges incident with this
+        // dummy node is also removed (within the remove method)
+        dummyNode.getOwner().remove(dummyNode);
+      }
+
+      // add the real edge to graph
+      this.graphManager.add(lEdge, lEdge.source, lEdge.target);
+    }
+  }
+};
+
+Layout.transform = function (sliderValue, defaultValue, minDiv, maxMul) {
+  if (minDiv != undefined && maxMul != undefined) {
+    var value = defaultValue;
+
+    if (sliderValue <= 50)
+    {
+      var minValue = defaultValue / minDiv;
+      value -= ((defaultValue - minValue) / 50) * (50 - sliderValue);
+    }
+    else
+    {
+      var maxValue = defaultValue * maxMul;
+      value += ((maxValue - defaultValue) / 50) * (sliderValue - 50);
+    }
+
+    return value;
+  }
+  else {
+    var a, b;
+
+    if (sliderValue <= 50)
+    {
+      a = 9.0 * defaultValue / 500.0;
+      b = defaultValue / 10.0;
+    }
+    else
+    {
+      a = 9.0 * defaultValue / 50.0;
+      b = -8 * defaultValue;
+    }
+
+    return (a * sliderValue + b);
+  }
+};
+
+/**
+ * This method finds and returns the center of the given nodes, assuming
+ * that the given nodes form a tree in themselves.
+ */
+Layout.findCenterOfTree = function (nodes)
+{
+  var list = [];
+  list = list.concat(nodes);
+
+  var removedNodes = [];
+  var remainingDegrees = new Map();
+  var foundCenter = false;
+  var centerNode = null;
+
+  if (list.length == 1 || list.length == 2)
+  {
+    foundCenter = true;
+    centerNode = list[0];
+  }
+
+  for (var i = 0; i < list.length; i++)
+  {
+    var node = list[i];
+    var degree = node.getNeighborsList().size;
+    remainingDegrees.set(node, node.getNeighborsList().size);
+
+    if (degree == 1)
+    {
+      removedNodes.push(node);
+    }
+  }
+
+  var tempList = [];
+  tempList = tempList.concat(removedNodes);
+
+  while (!foundCenter)
+  {
+    var tempList2 = [];
+    tempList2 = tempList2.concat(tempList);
+    tempList = [];
+
+    for (var i = 0; i < list.length; i++)
+    {
+      var node = list[i];
+
+      var index = list.indexOf(node);
+      if (index >= 0) {
+        list.splice(index, 1);
+      }
+
+      var neighbours = node.getNeighborsList();
+
+      neighbours.forEach(function(neighbour) {
+        if (removedNodes.indexOf(neighbour) < 0)
+        {
+          var otherDegree = remainingDegrees.get(neighbour);
+          var newDegree = otherDegree - 1;
+
+          if (newDegree == 1)
+          {
+            tempList.push(neighbour);
+          }
+
+          remainingDegrees.set(neighbour, newDegree);
+        }
+      });
+    }
+
+    removedNodes = removedNodes.concat(tempList);
+
+    if (list.length == 1 || list.length == 2)
+    {
+      foundCenter = true;
+      centerNode = list[0];
+    }
+  }
+
+  return centerNode;
+};
+
+/**
+ * During the coarsening process, this layout may be referenced by two graph managers
+ * this setter function grants access to change the currently being used graph manager
+ */
+Layout.prototype.setGraphManager = function (gm)
+{
+  this.graphManager = gm;
+};
+
+module.exports = Layout;

frontend/node_modules/layout-base/src/fd/FDLayoutConstants.js

@@ -0,0 +1,34 @@
+var LayoutConstants = require('../LayoutConstants');
+
+function FDLayoutConstants() {
+}
+
+//FDLayoutConstants inherits static props in LayoutConstants
+for (var prop in LayoutConstants) {
+  FDLayoutConstants[prop] = LayoutConstants[prop];
+}
+
+FDLayoutConstants.MAX_ITERATIONS = 2500;
+
+FDLayoutConstants.DEFAULT_EDGE_LENGTH = 50;
+FDLayoutConstants.DEFAULT_SPRING_STRENGTH = 0.45;
+FDLayoutConstants.DEFAULT_REPULSION_STRENGTH = 4500.0;
+FDLayoutConstants.DEFAULT_GRAVITY_STRENGTH = 0.4;
+FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_STRENGTH = 1.0;
+FDLayoutConstants.DEFAULT_GRAVITY_RANGE_FACTOR = 3.8;
+FDLayoutConstants.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR = 1.5;
+FDLayoutConstants.DEFAULT_USE_SMART_IDEAL_EDGE_LENGTH_CALCULATION = true;
+FDLayoutConstants.DEFAULT_USE_SMART_REPULSION_RANGE_CALCULATION = true;
+FDLayoutConstants.DEFAULT_COOLING_FACTOR_INCREMENTAL = 0.3;
+FDLayoutConstants.COOLING_ADAPTATION_FACTOR = 0.33;
+FDLayoutConstants.ADAPTATION_LOWER_NODE_LIMIT = 1000;
+FDLayoutConstants.ADAPTATION_UPPER_NODE_LIMIT = 5000;
+FDLayoutConstants.MAX_NODE_DISPLACEMENT_INCREMENTAL = 100.0;
+FDLayoutConstants.MAX_NODE_DISPLACEMENT = FDLayoutConstants.MAX_NODE_DISPLACEMENT_INCREMENTAL * 3;
+FDLayoutConstants.MIN_REPULSION_DIST = FDLayoutConstants.DEFAULT_EDGE_LENGTH / 10.0;
+FDLayoutConstants.CONVERGENCE_CHECK_PERIOD = 100;
+FDLayoutConstants.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR = 0.1;
+FDLayoutConstants.MIN_EDGE_LENGTH = 1;
+FDLayoutConstants.GRID_CALCULATION_CHECK_PERIOD = 10;
+
+module.exports = FDLayoutConstants;

frontend/node_modules/layout-base/src/util/Point.js

@@ -0,0 +1,73 @@
+/*
+ *This class is the javascript implementation of the Point.java class in jdk
+ */
+function Point(x, y, p) {
+  this.x = null;
+  this.y = null;
+  if (x == null && y == null && p == null) {
+    this.x = 0;
+    this.y = 0;
+  }
+  else if (typeof x == 'number' && typeof y == 'number' && p == null) {
+    this.x = x;
+    this.y = y;
+  }
+  else if (x.constructor.name == 'Point' && y == null && p == null) {
+    p = x;
+    this.x = p.x;
+    this.y = p.y;
+  }
+}
+
+Point.prototype.getX = function () {
+  return this.x;
+}
+
+Point.prototype.getY = function () {
+  return this.y;
+}
+
+Point.prototype.getLocation = function () {
+  return new Point(this.x, this.y);
+}
+
+Point.prototype.setLocation = function (x, y, p) {
+  if (x.constructor.name == 'Point' && y == null && p == null) {
+    p = x;
+    this.setLocation(p.x, p.y);
+  }
+  else if (typeof x == 'number' && typeof y == 'number' && p == null) {
+    //if both parameters are integer just move (x,y) location
+    if (parseInt(x) == x && parseInt(y) == y) {
+      this.move(x, y);
+    }
+    else {
+      this.x = Math.floor(x + 0.5);
+      this.y = Math.floor(y + 0.5);
+    }
+  }
+}
+
+Point.prototype.move = function (x, y) {
+  this.x = x;
+  this.y = y;
+}
+
+Point.prototype.translate = function (dx, dy) {
+  this.x += dx;
+  this.y += dy;
+}
+
+Point.prototype.equals = function (obj) {
+  if (obj.constructor.name == "Point") {
+    var pt = obj;
+    return (this.x == pt.x) && (this.y == pt.y);
+  }
+  return this == obj;
+}
+
+Point.prototype.toString = function () {
+  return new Point().constructor.name + "[x=" + this.x + ",y=" + this.y + "]";
+}
+
+module.exports = Point;

frontend/node_modules/layout-base/src/util/Transform.js

@@ -0,0 +1,157 @@
+var PointD = require('./PointD');
+
+function Transform(x, y) {
+  this.lworldOrgX = 0.0;
+  this.lworldOrgY = 0.0;
+  this.ldeviceOrgX = 0.0;
+  this.ldeviceOrgY = 0.0;
+  this.lworldExtX = 1.0;
+  this.lworldExtY = 1.0;
+  this.ldeviceExtX = 1.0;
+  this.ldeviceExtY = 1.0;
+}
+
+Transform.prototype.getWorldOrgX = function ()
+{
+  return this.lworldOrgX;
+}
+
+Transform.prototype.setWorldOrgX = function (wox)
+{
+  this.lworldOrgX = wox;
+}
+
+Transform.prototype.getWorldOrgY = function ()
+{
+  return this.lworldOrgY;
+}
+
+Transform.prototype.setWorldOrgY = function (woy)
+{
+  this.lworldOrgY = woy;
+}
+
+Transform.prototype.getWorldExtX = function ()
+{
+  return this.lworldExtX;
+}
+
+Transform.prototype.setWorldExtX = function (wex)
+{
+  this.lworldExtX = wex;
+}
+
+Transform.prototype.getWorldExtY = function ()
+{
+  return this.lworldExtY;
+}
+
+Transform.prototype.setWorldExtY = function (wey)
+{
+  this.lworldExtY = wey;
+}
+
+/* Device related */
+
+Transform.prototype.getDeviceOrgX = function ()
+{
+  return this.ldeviceOrgX;
+}
+
+Transform.prototype.setDeviceOrgX = function (dox)
+{
+  this.ldeviceOrgX = dox;
+}
+
+Transform.prototype.getDeviceOrgY = function ()
+{
+  return this.ldeviceOrgY;
+}
+
+Transform.prototype.setDeviceOrgY = function (doy)
+{
+  this.ldeviceOrgY = doy;
+}
+
+Transform.prototype.getDeviceExtX = function ()
+{
+  return this.ldeviceExtX;
+}
+
+Transform.prototype.setDeviceExtX = function (dex)
+{
+  this.ldeviceExtX = dex;
+}
+
+Transform.prototype.getDeviceExtY = function ()
+{
+  return this.ldeviceExtY;
+}
+
+Transform.prototype.setDeviceExtY = function (dey)
+{
+  this.ldeviceExtY = dey;
+}
+
+Transform.prototype.transformX = function (x)
+{
+  var xDevice = 0.0;
+  var worldExtX = this.lworldExtX;
+  if (worldExtX != 0.0)
+  {
+    xDevice = this.ldeviceOrgX +
+            ((x - this.lworldOrgX) * this.ldeviceExtX / worldExtX);
+  }
+
+  return xDevice;
+}
+
+Transform.prototype.transformY = function (y)
+{
+  var yDevice = 0.0;
+  var worldExtY = this.lworldExtY;
+  if (worldExtY != 0.0)
+  {
+    yDevice = this.ldeviceOrgY +
+            ((y - this.lworldOrgY) * this.ldeviceExtY / worldExtY);
+  }
+
+
+  return yDevice;
+}
+
+Transform.prototype.inverseTransformX = function (x)
+{
+  var xWorld = 0.0;
+  var deviceExtX = this.ldeviceExtX;
+  if (deviceExtX != 0.0)
+  {
+    xWorld = this.lworldOrgX +
+            ((x - this.ldeviceOrgX) * this.lworldExtX / deviceExtX);
+  }
+
+
+  return xWorld;
+}
+
+Transform.prototype.inverseTransformY = function (y)
+{
+  var yWorld = 0.0;
+  var deviceExtY = this.ldeviceExtY;
+  if (deviceExtY != 0.0)
+  {
+    yWorld = this.lworldOrgY +
+            ((y - this.ldeviceOrgY) * this.lworldExtY / deviceExtY);
+  }
+  return yWorld;
+}
+
+Transform.prototype.inverseTransformPoint = function (inPoint)
+{
+  var outPoint =
+          new PointD(this.inverseTransformX(inPoint.x),
+                  this.inverseTransformY(inPoint.y));
+  return outPoint;
+}
+
+module.exports = Transform;

frontend/node_modules/layout-base/src/util/UniqueIDGeneretor.js

@@ -0,0 +1,29 @@
+function UniqueIDGeneretor() {
+}
+
+UniqueIDGeneretor.lastID = 0;
+
+UniqueIDGeneretor.createID = function (obj) {
+  if (UniqueIDGeneretor.isPrimitive(obj)) {
+    return obj;
+  }
+  if (obj.uniqueID != null) {
+    return obj.uniqueID;
+  }
+  obj.uniqueID = UniqueIDGeneretor.getString();
+  UniqueIDGeneretor.lastID++;
+  return obj.uniqueID;
+}
+
+UniqueIDGeneretor.getString = function (id) {
+  if (id == null)
+    id = UniqueIDGeneretor.lastID;
+  return "Object#" + id + "";
+}
+
+UniqueIDGeneretor.isPrimitive = function (arg) {
+  var type = typeof arg;
+  return arg == null || (type != "object" && type != "function");
+}
+
+module.exports = UniqueIDGeneretor;